Software/Tools

Useful Resources

Directories and Resources > Software/Tools (24)

	Bioinformatics Databases and Tools Guide Microarray analysis tools http://www.agr.kuleuven.ac.be/
	Bioinformatics Software Bioinformatics Software http://www.rome-center.com/
	Bioinformatik.de A yahoo-like webdirectory for microarray software (with a hierarchical structure). http://www.bioinformatik.de/cgi-bin/browse/Catalog/Software/Software_for_Microarrays/
	Bmido Although mainly a bioinformatics guide, the microarray analysis software links may be of use. Note: hasn't been updated much since 2001. http://www.bmido.com/bioinfo.htm
	BRB Array Tools Sequence, Protein, and Annotation Websites http://linus.nci.nih.gov/
	Children's Mercy Hospital Software and gene expression profiling references. http://www.cmh.edu/
	DNA Microarrays Resource Microarray data mining and analysis software http://www.dnamicroarrays.info/Data_analysis.html
	Genomics Links Scroll down 2/3 of the way down the site to reach the genomics section http://lightning.prohosting.com/immune/software.htm
	KDnuggets A list of links to data analysis software. http://www.kdnuggets.com/
	Microarray data analysis Microarray data analysis methods including expression array data collection, analysis, clustering. http://www.biowww.net/browse-17.html
	Microarray Web Sites Novel features comparison for commercial microarray analysis software. http://home.comcast.net/~natgoodman/Microarray_Web_Sites.htm
	Microarrays Tools for microarrays data analysis, standardization, etc http://bmbus6.leeds.ac.uk/www/lindsay.archana.html
	Microarrays Annotation and expression tools and databases. http://clinlab.uch.edu/PathlinkData/Bioinformatics/Microarrays.htm
	MolGen Software and tools http://molgen.biol.rug.nl/
	Network Science Corporation Software for pathway and sequence analysis and visualization. http://www.netsci.org/
	Oklahoma State University (Microarray Core Facility) Links to statistical as well as datamining and visualization software, and also databases. http://microarray.okstate.edu/resources.shtml#Statistics
	SMU School of Engineering A list of links to sites/projects/facilities dealing with microarray data analysis. http://engr.smu.edu/
	The Arabidopsis Information Resource Clustering and other data analysis tools. http://www.arabidopsis.org/info/expression/microarraySoftwareV2.jsp
	Toulouse Genopole Microarray software directory http://genopole.toulouse.inra.fr/
	University of California Riverside (Center for Plant Cell Biology) Software and hardware resources http://www.faculty.ucr.edu/~tgirke/Tools.htm#Microarray

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Summaries of leading vendors and sites only. See microarray resource sites listed for more complete listings and detailed descriptions. Information provided as a free service; the editors have made an effort to accurately reflect information as of Aug 10 2006, but do not warrant or guarantee it in any way as of that or later dates.

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