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Directories and Resources > Articles/Papers/Reviews (64)
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Joint Analysis of DNA Copy Numbers
A review of data analysis methods designed to study the overall transcriptional effects of DNA copy number alterations. http://bioinfo.cs.technion.ac.il/
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Journal of Clinical Oncology
Classification of clear-cell sarcoma as a subtype of melanoma by genomic profiling http://www.jco.org/cgi/content/full/21/9/1775
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Journal of the American Society of Hematology
Distinctive gene expression profiles of CD34 cells from patients with myelodysplastic syndrome characterized by specific chromosomal abnormalities. http://www.bloodjournal.org/cgi/content/full/104/13/4210
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KEGG
Paper describing the applications of KEGG. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=14681412&dopt=Abstract
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Medical and Molecular Biology Databases
900 databases on medicine and molecular biology of these there are about 100 microarray related (under the categories of cDNA, gene db, gene expression). http://www.meddb.info/
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Microarray analysis of genes showing variable expression following a blood meal in Anopheles gambiae
A microarray analysis of genes of Anopheles gambiae, shows that as many as 33% of their corresponding transcription products vary in abundance within 24 hours after a blood meal. http://repositories.cdlib.org/postprints/718/
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Microarray Technology: A Review of New Strategies to Discover Candidate Vulnerability Genes in Psychiatric Disorders
This article reviews the steps in this discovery process, including the acquisition and characterization of high-quality postmortem brain tissue, RNA extraction, and preparation and use of microarray technology. Two alternative microarray methods and factors affecting the quality of array data are reviewed. http://ajp.psychiatryonline.org/
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Monitoring the Expression Pattern of 1300 Arabidopsis Genes under Drought and Cold Stresses by Using a Full-Length cDNA Microarray
cDNA microarray were used on full-length Arabidopsis cDNAs to identify drought- and cold-inducible genes and target genes of DREB1A/CBF3, a transcription factor that controls stress-inducible gene expression. http://www.plantcell.org/
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Nature Genetics
Fundamentals of experimental design for cDNA microarrays. http://www.nature.com/ng/journal/v32/n4s/full/ng1031.html
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New England Journal of Medicine
Microarrays and clinical investigation into primary acute myeloid leukemia (AML) class subdivision based on gene-expression profiling. http://content.nejm.org/cgi/content/extract/350/16/1595
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Plant Physiology
Benchmarking the CATMA microarray compared to Affymetrix and Agilent platforms. CATMA is a new tool for Arabidopsis transcriptome analysis. http://www.plantphysiol.org/cgi/content/full/137/2/588
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Practical Approaches to Analyzing Results of Microarray Experiments
This review provides an evaluation of common clustering methods and approaches to use them. It discusses methods for scoring genes for their relevance, focusing on the statistical meaning of microarray results, especially with regard to the problem of multiple testing. The review also deals with the problem of adding biologic meaning to the results of microarray experiments. http://ajrcmb.atsjournals.org/
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Prediction of Sensitivity of Esophageal Tumors to Adjuvant Chemotherapy by cDNA Microarray Analysis of Gene-Expression Profiles
This review provides an application of cDNA microarray analyses in establishing a genetic method for predicting the outcome of adjuvant chemotherapy to esophageal cancers. http://cancerres.aacrjournals.org/
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Pritzker Neuropsychiatric Disorders Research Consortium
An assortment of publications are listed in the field of neuropsychiatry gene expression. http://www.pritzkerneuropsych.org/
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Science of Aging Knowledge Environment
Microarrays as a tool to investigate the biology of aging http://sageke.sciencemag.org/cgi/content/full/2004/42/re7
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ScienceDaily
A study showing that labs using commercial rather than homemade microarray platforms and common procedures can generate comparable data. http://www.sciencedaily.com/releases/2005/05/050527235827.htm
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Society for Neuroscience - Mental Disorders and Microarrays
Microarray studies providing an insight into how sets of genes link to depression and schizophrenia. http://www.sfn.org/index.cfm?pagename=brainBriefings_mentalDisordersAndMicroarrays
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Systematic Expression Profiling of the Mouse Transcriptome Using RIKEN cDNA Microarrays
A report on determining the expression profile of 57,931 clones on 20 mouse tissues using cDNA microarrays. http://www.euchromatin.net/
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The Progressing Clinical Utility of DNA Microarrays
This review considers the main types of DNA microarrays, the kinds of information they provide, how that information cancer and carcinogenesis, and the expanding role of this technology in clinical oncology. http://caonline.amcancersoc.org/
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Transcriptional Profile of Rat Extraocular Muscle by Serial Analysis of Gene Expression
In this study, the broad molecular genetics profile underlying the novel extraocular muscle phenotype was examined. http://www.iovs.org/
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