Data Repositories

Useful Resources

Data Management/Publication > Data Repositories (43)

	GNF SymAtlas GNF SymAtlas http://symatlas.gnf.org/SymAtlas/
	Horizon Scientific Press Provides a very basic introduction, however, the section of microarray links may be of value. http://www.horizonpress.com/
	Illinois State Academy of Science Gene databases sorted alphabetically. http://www.il-st-acad-sci.org/
	Kyoto Encyclopedia of Genes and Genomes A bioinformatics encyclopedia designed to address the challenge in the post-genomic era of obtaining a complete computer representation of the cell, the organism, and the biosphere to predict cellular processes and organism behaviors from genomic and molecular information. http://www.genome.jp/kegg/
	List of Lists Annotated A web driven database of gene lists derived from genome-wide approaches such as expression profiling and proteomics. It allows researchers to measure the similarity of gene lists. http://lola.gwu.edu/
	Liverpool University, School of Biological Sciences, Laboratory for Environmental Gene Regulation Research include ESTs and microarray projects for common carp, zebrafish, rainbow trout, ground squirrel, roach, C. Elegans, EAC. etc. http://legr.liv.ac.uk/
	Medical College of Wisconsin Rat Genome Database The Rat Genome Database curates and integrates rat genetic and genomic data, and provides access to this data to support research using the rat as a genetic model for the study of human disease. http://rgd.mcw.edu/
	Microarray gene expression database: progress towards an international repository of gene expression data A report of the third Microarray Gene Expression Database group meeting. http://www.euchromatin.org/
	Microarray World Databases for microarray analysis and gene expression profiling. http://microarrayworld.com/DatabasePage.html
	Online Mendelian Inheritance in Man A database of human genes and genetic disorders developed by staff at Johns Hopkins and hosted on the Web by NCBI. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
	Oxford University Press Mouse gene expression database http://www.oup.co.uk/nar/database/summary/15
	Princeton University Microarray database Stores raw and normalized data from microarray experiments, and provides data retrieval, analysis and visualization interfaces. http://puma.princeton.edu/
	Resourcer Database The database includes 30 microarrays. Users can view the annotation for the elements on the chips and click through to other genomic databases. http://www.genomenewsnetwork.org/articles/11_01/Resourcerer.shtml
	Rice Expression Database RED holds raw and normalized data from expression profiles obtained by the Rice Microarray Project and other research groups. http://red.dna.affrc.go.jp/RED/
	Signet/GeneSpring Workgroup (formerly called GeNet) A microarray data repository developed by Agilent Technologies. http://envgen.nox.ac.uk/
	Soybean Genomics and Microarray Database Serves both as a sequence repository, holding DNA sequences for numerous EST's, and also as a microarray experiment database, allowing scientistists to explore the expression levels of the EST clones stored in the database and to correlate expression levels with function. http://psi081.ba.ars.usda.gov/SGMD/Default.htm
	The Jackson Laboratory Several gene expression datasets of particular interest may be the cross platform comparison. http://www.jax.org/staff/churchill/labsite/datasets/index.html
	UNC MicroArray Database Provides a service for microarray data storage, retrieval, analysis, and visualization http://genome.unc.edu/
	UniGene Organizes GenBank sequences into a non-redundant set of gene-orientated clusters. Gene titles are assigned to the clusters and these titles are commonly used in microarray research to refer to that particular gene. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=unigene
	University of Hamburg Although mainly a category for molecular biologists, the top three categories (global sequence databases, comparative genomics, and gene expression) as well as the sixth (genomic databases) may be of interest. http://www.biologie.uni-hamburg.de/

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Summaries of leading vendors and sites only. See microarray resource sites listed for more complete listings and detailed descriptions. Information provided as a free service; the editors have made an effort to accurately reflect information as of Aug 10 2006, but do not warrant or guarantee it in any way as of that or later dates.

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