Data Repositories

Useful Resources

Data Management/Publication > Data Repositories (43)

	NCBI HomePage The National Center for Biotechnology Information (NCBI) provides an integrated approach to the use of gene and protein sequence information, the scientific literature (MEDLINE), molecular structures, and related resources, in biomedicine. http://www.ncbi.nlm.nih.gov/geo/
	CardioGenomics Data from several mice and rat models of cardiomyopathy as well as a large data set examining human cardiomyopathies. http://cardiogenomics.med.harvard.edu/home
	ArrayExpress European Bioinformatics Institute project aimed at storing data in accordance with MGED object-oriented bioinformatics model. http://www.ebi.ac.uk/arrayexpress/
	Center for Information Biology Gene Expression Database Small repository sponsored by the Japan Society for the Promotion of Science . http://cibex.nig.ac.jp/index.jsp
	GeneSifter Data Center The GeneSifter Data Center provides the research community access to microarray datasets from various fields through the GeneSifter microarray data analysis system. The Data Center includes selected public datasets as well as datasets submitted by current GeneSifter customers. http://www.genesifter.net/web/dataCenter.html
	Stanford Microarray Database Stores raw and normalized data from microarray experiments, and provides data retrieval, analysis and visualization interfaces. http://genome-www5.stanford.edu/
	ProbeExplorer A suite of web based tools to search genomic databases mainly intended to investigate the association between oligonucleotide probes and transcripts, but flexible enough to serve as a general genome and transcriptome browser. http://probeexplorer.cicancer.org/
	BioDiscovery's GeneDirector GeneDirector provides data management for information generated throughout the array experiment workflow. http://biodiscovery.com/index/genedirector
	Storage and retrieval of microarray data and open source microarray database software This review discusses some of the desirable properties microarray databases to cope with large quantities of complex data and standards, and look at the features of several freely available alternatives. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=15988049&dopt=Abstract
	PRIDE PRIDE is a database of ESTs and gene expression profiles. http://mrg.psc.riken.go.jp/PRIDE/about.html
	Salk Institute for Biological Studies (Laboratory of Genetics) The GeneChip Data Interface is a gene query function allowing you to sort the datasets by gene group, probe set, or region. http://genechip.salk.edu/
	Arizona Cancer Center Bioinformatics Core, BioRag database The database provides information about human and mouse genes. The resource includes information about the genes that are represented in Unigene clusters. Support for rat, fly and C. elegans genes has been included recently. http://www.biorag.org/
	Axiope Scientific data management, sharing, publication, and databasing. http://www.axiope.org/scipublication.html
	BRI MicroArray Laboratory A single data set on the transcription profiling of Candida albicans cells undergoing the yeast to hyphal transition. http://cbr-rbc.nrc-cnrc.gc.ca/
	ChipDB Allows the user to search through the collection of strains, experiments, and genetic features in the database http://chipdb.wi.mit.edu/chipdb/public/
	Cochran Laboratory Primarily has links to databases (mainly species specific) http://www.cochranlab.org/
	Cytokine Family Database A collection of cDNA (including EST), gene and protein records of cytokines deposited in public databases. http://cytokine.medic.kumamoto-u.ac.jp/
	ENS microarray platform A global evaluation of microarray data warehouses http://www.transcriptome.ens.fr/sgdb/tools/data_management.php.en
	Entrez Gene (NCBI) Provides a single-query interface to curated sequence and descriptive information, including information, about genes. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene
	Epogerd Eukaryotic gene regulation database. http://www.bionet.nsc.ru/bgrs/thesis/4

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Summaries of leading vendors and sites only. See microarray resource sites listed for more complete listings and detailed descriptions. Information provided as a free service; the editors have made an effort to accurately reflect information as of Aug 10 2006, but do not warrant or guarantee it in any way as of that or later dates.

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